Database Query

miRGate is a curated database of human, mouse and rat miRNAs/mRNAs targets. It is designed to analyze miRNA and gene isoforms lists under a common and consistent space of annotations. Including all existing 3 UTR and the entirely known miRNAs. All Havana biotypes and ENCODE principal isoforms for the three organisms are also included.

Cite us

If you find this database useful, please cite us. [Pubmed], [Database Oxford]

Query parameters (See Help for details)

Please, choose if you will provide only genes/transcripts, only miRNAs or both

Please, select the namespace you will use for your genes/transcripts and/or miRNAs

Please provide your list(s) of gene/transcripts and/or mirnas. Each line per identifier.

Retrieve only matches from transcripts where the UTR is known, not amplified.

Retrieve only matches from transcripts that are the PRINCIPAL isoform.

if two predictions are near (at maximum [threshold] bp separation), group them in a row

Havana biotypes

Select the mirna-transcript computational prediction methods. In addition, select which gene-mirna validated database should be used to see if each retrieved prediction has been experimentally validated.

Query Results

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